J5_8IP8_004
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAAACGG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8IP8|1|RB|G|2110, 8IP8|1|RB|G|2115
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8IP8_004 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0715
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
8IP8|1|RB|G|1902
8IP8|1|RB|C|1903
8IP8|1|RB|A|1904
8IP8|1|RB|A|1905
8IP8|1|RB|A|1906
8IP8|1|RB|A|1907
8IP8|1|RB|C|1908
8IP8|1|RB|G|1909
8IP8|1|RB|G|1910
*
8IP8|1|RB|U|1934
8IP8|1|RB|G|1935
*
8IP8|1|RB|U|2103
8IP8|1|RB|G|2104
*
8IP8|1|RB|C|2108
8IP8|1|RB|G|2109
8IP8|1|RB|G|2110
8IP8|1|RB|A|2111
8IP8|1|RB|C|2112
8IP8|1|RB|A|2113
8IP8|1|RB|A|2114
8IP8|1|RB|G|2115
8IP8|1|RB|G|2116
*
8IP8|1|RB|C|2324
8IP8|1|RB|A|2325
8IP8|1|RB|C|2326
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain DB
- 60S ribosomal protein uL3
- Chain GA
- 60S ribosomal protein uL14
- Chain LA
- 60S ribosomal protein eL19
- Chain OA
- 60S ribosomal protein eL24
- Chain aa
- Small subunit ribosomal RNA; SSU rRNA
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