J5_8IP8_005
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAAGACC*GGAUUACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8IP8|1|RB|A|2397, 8IP8|1|RB|A|2814, 8IP8|1|RB|U|2870, 8IP8|1|RB|G|2871, 8IP8|1|RB|U|2872, 8IP8|1|RB|U|2975, 8IP8|1|RB|U|2976
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IP8|1|RB|A|2392
8IP8|1|RB|G|2393
8IP8|1|RB|A|2394
8IP8|1|RB|A|2395
8IP8|1|RB|G|2396
8IP8|1|RB|A|2397
8IP8|1|RB|C|2398
8IP8|1|RB|C|2399
*
8IP8|1|RB|G|2812
8IP8|1|RB|G|2813
8IP8|1|RB|A|2814
8IP8|1|RB|U|2815
8IP8|1|RB|U|2816
8IP8|1|RB|A|2817
8IP8|1|RB|C|2818
8IP8|1|RB|U|2819
8IP8|1|RB|G|2820
*
8IP8|1|RB|C|2864
8IP8|1|RB|U|2865
8IP8|1|RB|U|2866
8IP8|1|RB|C|2867
8IP8|1|RB|G|2868
8IP8|1|RB|A|2869
8IP8|1|RB|U|2870
8IP8|1|RB|G|2871
8IP8|1|RB|U|2872
8IP8|1|RB|C|2873
*
8IP8|1|RB|G|2948
8IP8|1|RB|G|2949
8IP8|1|RB|U|2950
8IP8|1|RB|U|2951
8IP8|1|RB|U|2952
8IP8|1|RB|A|2953
8IP8|1|RB|G|2954
*
8IP8|1|RB|U|2972
8IP8|1|RB|A|2973
8IP8|1|RB|G|2974
8IP8|1|RB|U|2975
8IP8|1|RB|U|2976
8IP8|1|RB|U|2977
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain DA
- 60S ribosomal protein uL2
- Chain DB
- 60S ribosomal protein uL3
- Chain EB
- 60S ribosomal protein uL4
- Chain OB
- 60S ribosomal protein eL29
- Chain bl
- eukaryotic release factor 1
- Chain cl
- Transfer RNA; tRNA
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