J5_8IP8_007

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

8IP8|1|aa|A|545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IP8|1|aa|C|31
8IP8|1|aa|U|32
8IP8|1|aa|U|33
8IP8|1|aa|G|34
8IP8|1|aa|U|35
*
8IP8|1|aa|A|477
8IP8|1|aa|A|478
8IP8|1|aa|A|479
8IP8|1|aa|U|480
8IP8|1|aa|A|481
8IP8|1|aa|A|482
8IP8|1|aa|C|483
*
8IP8|1|aa|G|513
8IP8|1|aa|G|514
8IP8|1|aa|A|515
8IP8|1|aa|A|516
8IP8|1|aa|U|517
8IP8|1|aa|G|518
8IP8|1|aa|A|519
8IP8|1|aa|G|520
*
8IP8|1|aa|C|540
8IP8|1|aa|G|541
8IP8|1|aa|A|542
8IP8|1|aa|G|543
8IP8|1|aa|G|544
8IP8|1|aa|A|545
8IP8|1|aa|U|546
8IP8|1|aa|C|547
8IP8|1|aa|C|548
8IP8|1|aa|A|549
8IP8|1|aa|U|550
*
8IP8|1|aa|A|596
8IP8|1|aa|U|597
8IP8|1|aa|A|598
8IP8|1|aa|G|599

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain eb

40S ribosomal protein uS4

Chain ga

40S ribosomal protein uS12

Chain ya

40S ribosomal protein eS30