J5_8IP8_012

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUACGUGCUACUCG*CGUGCAACAAACC*GCG*CGGAU*ACGC

Length

40 nucleotides

Bulged bases

8IP8|1|aa|G|132, 8IP8|1|aa|U|133, 8IP8|1|aa|C|135, 8IP8|1|aa|U|136, 8IP8|1|aa|C|138, 8IP8|1|aa|U|139, 8IP8|1|aa|C|174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IP8|1|aa|G|127
8IP8|1|aa|G|128
8IP8|1|aa|U|129
8IP8|1|aa|A|130
8IP8|1|aa|C|131
8IP8|1|aa|G|132
8IP8|1|aa|U|133
8IP8|1|aa|G|134
8IP8|1|aa|C|135
8IP8|1|aa|U|136
8IP8|1|aa|A|137
8IP8|1|aa|C|138
8IP8|1|aa|U|139
8IP8|1|aa|C|140
8IP8|1|aa|G|141
*
8IP8|1|aa|C|170
8IP8|1|aa|G|171
8IP8|1|aa|U|172
8IP8|1|aa|G|173
8IP8|1|aa|C|174
8IP8|1|aa|A|175
8IP8|1|aa|A|176
8IP8|1|aa|C|177
8IP8|1|aa|A|178
8IP8|1|aa|A|179
8IP8|1|aa|A|180
8IP8|1|aa|C|181
8IP8|1|aa|C|182
*
8IP8|1|aa|G|199
8IP8|1|aa|C|200
8IP8|1|aa|G|201
*
8IP8|1|aa|C|266
8IP8|1|aa|G|267
8IP8|1|aa|G|268
8IP8|1|aa|A|269
8IP8|1|aa|U|270
*
8IP8|1|aa|A|292
8IP8|1|aa|C|293
8IP8|1|aa|G|294
8IP8|1|aa|C|295

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ca

40S ribosomal protein eS8

Chain gb

40S ribosomal protein eS6

Chain ja

40S ribosomal protein eS4