J5_8IP9_001

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

8IP9|1|aa|A|545, 8IP9|1|aa|C|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IP9|1|aa|C|31
8IP9|1|aa|U|32
8IP9|1|aa|U|33
8IP9|1|aa|G|34
8IP9|1|aa|U|35
*
8IP9|1|aa|A|477
8IP9|1|aa|A|478
8IP9|1|aa|A|479
8IP9|1|aa|U|480
8IP9|1|aa|A|481
8IP9|1|aa|A|482
8IP9|1|aa|C|483
*
8IP9|1|aa|G|513
8IP9|1|aa|G|514
8IP9|1|aa|A|515
8IP9|1|aa|A|516
8IP9|1|aa|U|517
8IP9|1|aa|G|518
8IP9|1|aa|A|519
8IP9|1|aa|G|520
*
8IP9|1|aa|C|540
8IP9|1|aa|G|541
8IP9|1|aa|A|542
8IP9|1|aa|G|543
8IP9|1|aa|G|544
8IP9|1|aa|A|545
8IP9|1|aa|U|546
8IP9|1|aa|C|547
8IP9|1|aa|C|548
8IP9|1|aa|A|549
8IP9|1|aa|U|550
*
8IP9|1|aa|A|596
8IP9|1|aa|U|597
8IP9|1|aa|A|598
8IP9|1|aa|G|599

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain eb

40S ribosomal protein uS4

Chain ga

40S ribosomal protein S23

Chain ya

40S ribosomal protein eS30