J5_8IP9_004

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUACGUGCUACUCG*CGUGCAACAAACCCC*GGGCG*CGGAU*ACGC

Length

44 nucleotides

Bulged bases

8IP9|1|aa|G|132, 8IP9|1|aa|U|133, 8IP9|1|aa|C|135, 8IP9|1|aa|U|136, 8IP9|1|aa|A|137, 8IP9|1|aa|C|138, 8IP9|1|aa|C|174, 8IP9|1|aa|A|176, 8IP9|1|aa|A|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IP9|1|aa|G|127
8IP9|1|aa|G|128
8IP9|1|aa|U|129
8IP9|1|aa|A|130
8IP9|1|aa|C|131
8IP9|1|aa|G|132
8IP9|1|aa|U|133
8IP9|1|aa|G|134
8IP9|1|aa|C|135
8IP9|1|aa|U|136
8IP9|1|aa|A|137
8IP9|1|aa|C|138
8IP9|1|aa|U|139
8IP9|1|aa|C|140
8IP9|1|aa|G|141
*
8IP9|1|aa|C|170
8IP9|1|aa|G|171
8IP9|1|aa|U|172
8IP9|1|aa|G|173
8IP9|1|aa|C|174
8IP9|1|aa|A|175
8IP9|1|aa|A|176
8IP9|1|aa|C|177
8IP9|1|aa|A|178
8IP9|1|aa|A|179
8IP9|1|aa|A|180
8IP9|1|aa|C|181
8IP9|1|aa|C|182
8IP9|1|aa|C|183
8IP9|1|aa|C|184
*
8IP9|1|aa|G|197
8IP9|1|aa|G|198
8IP9|1|aa|G|199
8IP9|1|aa|C|200
8IP9|1|aa|G|201
*
8IP9|1|aa|C|266
8IP9|1|aa|G|267
8IP9|1|aa|G|268
8IP9|1|aa|A|269
8IP9|1|aa|U|270
*
8IP9|1|aa|A|292
8IP9|1|aa|C|293
8IP9|1|aa|G|294
8IP9|1|aa|C|295

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ca

40S ribosomal protein eS8

Chain gb

40S ribosomal protein eS6

Chain ja

40S ribosomal protein eS4