J5_8IPD_002
3D structure
- PDB id
- 8IPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAGUC*G(2MG)AC*G(I4U)UC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 8IPD|1|2|C|2289, 8IPD|1|2|U|2350
- QA status
- Modified nucleotides: 2MG, I4U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8IPD_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.1008
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IPD|1|2|G|1335
8IPD|1|2|G|1336
8IPD|1|2|A|1337
8IPD|1|2|G|1338
8IPD|1|2|U|1339
8IPD|1|2|C|1340
*
8IPD|1|2|G|1516
8IPD|1|2|2MG|1517
8IPD|1|2|A|1518
8IPD|1|2|C|1519
*
8IPD|1|2|G|1658
8IPD|1|2|I4U|1659
8IPD|1|2|U|1660
8IPD|1|2|C|1661
*
8IPD|1|2|G|2288
8IPD|1|2|C|2289
8IPD|1|2|C|2290
*
8IPD|1|2|G|2345
8IPD|1|2|C|2346
8IPD|1|2|A|2347
8IPD|1|2|G|2348
8IPD|1|2|A|2349
8IPD|1|2|U|2350
8IPD|1|2|C|2351
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L27a
- Chain Q
- 60S ribosomal protein L13
- Chain U
- 60S ribosomal protein L15
- Chain k
- 60S ribosomal protein L32
- Chain l
- 60S ribosomal protein L28
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