J5_8J1Z_004

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8J1Z|1|a|U|1758, 8J1Z|1|a|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8J1Z_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0661

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8J1Z|1|a|G|1674
8J1Z|1|a|C|1675
8J1Z|1|a|A|1676
8J1Z|1|a|A|1677
8J1Z|1|a|A|1678
8J1Z|1|a|A|1679
8J1Z|1|a|U|1680
8J1Z|1|a|G|1681
8J1Z|1|a|G|1682
*
8J1Z|1|a|C|1706
8J1Z|1|a|G|1707
*
8J1Z|1|a|U|1751
8J1Z|1|a|C|1752
*
8J1Z|1|a|G|1756
8J1Z|1|a|A|1757
8J1Z|1|a|U|1758
8J1Z|1|a|A|1759
8J1Z|1|a|C|1760
8J1Z|1|a|C|1761
8J1Z|1|a|A|1762
8J1Z|1|a|G|1763
8J1Z|1|a|C|1764
*
8J1Z|1|a|G|1988
8J1Z|1|a|G|1989
8J1Z|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L14

Chain o

50S ribosomal protein L19