J5_8JDK_003
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8JDK|1|D|G|3620, 8JDK|1|D|G|3625
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8JDK_003 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0947
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
8JDK|1|D|G|2855
8JDK|1|D|C|2856
8JDK|1|D|A|2857
8JDK|1|D|A|2858
8JDK|1|D|G|2859
8JDK|1|D|C|2860
8JDK|1|D|OMC|2861
8JDK|1|D|G|2862
8JDK|1|D|G|2863
*
8JDK|1|D|U|2887
8JDK|1|D|G|2888
*
8JDK|1|D|U|3613
8JDK|1|D|G|3614
*
8JDK|1|D|C|3618
8JDK|1|D|G|3619
8JDK|1|D|G|3620
8JDK|1|D|A|3621
8JDK|1|D|C|3622
8JDK|1|D|C|3623
8JDK|1|D|A|3624
8JDK|1|D|G|3625
8JDK|1|D|G|3626
*
8JDK|1|D|C|3835
8JDK|1|D|A|3836
8JDK|1|D|C|3837
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L3
- Chain W
- 60S ribosomal protein L19
- Chain a
- 60S ribosomal protein L23
- Chain b
- 60S ribosomal protein L24
- Chain w
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: