J5_8JDK_007
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CAUG*CGAA(PSU)GGC*GA(OMG)*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8JDK|1|w|A|92, 8JDK|1|w|C|472, 8JDK|1|w|A|473
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8JDK_007 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1612
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8JDK|1|w|C|53
8JDK|1|w|A|54
8JDK|1|w|U|55
8JDK|1|w|G|56
*
8JDK|1|w|C|89
8JDK|1|w|G|90
8JDK|1|w|A|91
8JDK|1|w|A|92
8JDK|1|w|PSU|93
8JDK|1|w|G|94
8JDK|1|w|G|95
8JDK|1|w|C|96
*
8JDK|1|w|G|434
8JDK|1|w|A|435
8JDK|1|w|OMG|436
*
8JDK|1|w|C|457
8JDK|1|w|A|458
8JDK|1|w|C|459
*
8JDK|1|w|G|470
8JDK|1|w|G|471
8JDK|1|w|C|472
8JDK|1|w|A|473
8JDK|1|w|G|474
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 1
- 40S ribosomal protein S4, X isoform
- Chain 3
- 40S ribosomal protein S6
- Chain 5
- 40S ribosomal protein S8
- Chain 6
- 40S ribosomal protein S9
- Chain AK
- 40S ribosomal protein S24
- Chain a
- 60S ribosomal protein L23
Coloring options: