J5_8K2D_003
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 8K2D|1|C1|U|719, 8K2D|1|C1|A|784, 8K2D|1|C1|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8K2D_003 not in the Motif Atlas
- Homologous match to J5_8C3A_003
- Geometric discrepancy: 0.0883
- The information below is about J5_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K2D|1|C1|C|675
8K2D|1|C1|G|676
8K2D|1|C1|A|677
8K2D|1|C1|G|678
*
8K2D|1|C1|C|702
8K2D|1|C1|G|703
8K2D|1|C1|U|704
8K2D|1|C1|A|705
8K2D|1|C1|A|706
*
8K2D|1|C1|U|713
8K2D|1|C1|G|714
8K2D|1|C1|A|715
8K2D|1|C1|A|716
8K2D|1|C1|C|717
8K2D|1|C1|G|718
8K2D|1|C1|U|719
8K2D|1|C1|A|720
8K2D|1|C1|G|721
*
8K2D|1|C1|C|749
8K2D|1|C1|G|750
8K2D|1|C1|A|751
*
8K2D|1|C1|U|782
8K2D|1|C1|A|783
8K2D|1|C1|A|784
8K2D|1|C1|G|785
8K2D|1|C1|A|786
8K2D|1|C1|G|787
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4A
- Chain LL
- Large ribosomal subunit protein eL13A
- Chain LQ
- Large ribosomal subunit protein eL18A
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Li
- Large ribosomal subunit protein eL36A
Coloring options: