J5_8K2D_005
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8K2D|1|C1|A|2404, 8K2D|1|C1|A|2817, 8K2D|1|C1|G|2874, 8K2D|1|C1|U|2875, 8K2D|1|C1|U|2978, 8K2D|1|C1|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K2D|1|C1|A|2399
8K2D|1|C1|G|2400
8K2D|1|C1|A|2401
8K2D|1|C1|A|2402
8K2D|1|C1|G|2403
8K2D|1|C1|A|2404
8K2D|1|C1|C|2405
8K2D|1|C1|C|2406
*
8K2D|1|C1|G|2815
8K2D|1|C1|G|2816
8K2D|1|C1|A|2817
8K2D|1|C1|U|2818
8K2D|1|C1|A|2819
8K2D|1|C1|A|2820
8K2D|1|C1|C|2821
8K2D|1|C1|U|2822
8K2D|1|C1|G|2823
*
8K2D|1|C1|C|2867
8K2D|1|C1|U|2868
8K2D|1|C1|U|2869
8K2D|1|C1|C|2870
8K2D|1|C1|G|2871
8K2D|1|C1|A|2872
8K2D|1|C1|U|2873
8K2D|1|C1|G|2874
8K2D|1|C1|U|2875
8K2D|1|C1|C|2876
*
8K2D|1|C1|G|2951
8K2D|1|C1|G|2952
8K2D|1|C1|U|2953
8K2D|1|C1|U|2954
8K2D|1|C1|U|2955
8K2D|1|C1|A|2956
8K2D|1|C1|G|2957
*
8K2D|1|C1|U|2975
8K2D|1|C1|A|2976
8K2D|1|C1|G|2977
8K2D|1|C1|U|2978
8K2D|1|C1|U|2979
8K2D|1|C1|U|2980
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain CE
- Eukaryotic translation initiation factor 5A-1
- Chain LA
- Large ribosomal subunit protein uL2A
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LC
- Large ribosomal subunit protein uL4A
- Chain LP
- Large ribosomal subunit protein uL22A
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- Large ribosomal subunit protein eL29
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