J5_8K82_006
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8K82|1|C1|G|2418, 8K82|1|C1|A|2799, 8K82|1|C1|G|2800, 8K82|1|C1|A|2801, 8K82|1|C1|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8K82_006 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.2666
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K82|1|C1|U|2416
8K82|1|C1|U|2417
8K82|1|C1|G|2418
8K82|1|C1|A|2419
*
8K82|1|C1|U|2611
8K82|1|C1|U|2612
8K82|1|C1|U|2613
8K82|1|C1|G|2614
*
8K82|1|C1|C|2627
8K82|1|C1|A|2628
*
8K82|1|C1|U|2650
8K82|1|C1|G|2651
*
8K82|1|C1|C|2798
8K82|1|C1|A|2799
8K82|1|C1|G|2800
8K82|1|C1|A|2801
8K82|1|C1|A|2802
8K82|1|C1|A|2803
8K82|1|C1|A|2804
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain CN
- General negative regulator of transcription subunit 5
- Chain LA
- Large ribosomal subunit protein uL2A
- Chain LN
- Large ribosomal subunit protein eL15A
- Chain LQ
- Large ribosomal subunit protein eL18A
- Chain LT
- Large ribosomal subunit protein eL21A
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Lo
- Large ribosomal subunit protein eL42A
Coloring options: