J5_8OEQ_008
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8OEQ|1|AS|U|1432
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8OEQ_008 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0506
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OEQ|1|AS|G|656
8OEQ|1|AS|G|657
8OEQ|1|AS|A|658
8OEQ|1|AS|G|659
8OEQ|1|AS|U|660
8OEQ|1|AS|C|661
*
8OEQ|1|AS|G|795
8OEQ|1|AS|G|796
8OEQ|1|AS|A|797
8OEQ|1|AS|C|798
*
8OEQ|1|AS|G|937
8OEQ|1|AS|U|938
8OEQ|1|AS|U|939
8OEQ|1|AS|C|940
*
8OEQ|1|AS|G|1371
8OEQ|1|AS|C|1372
*
8OEQ|1|AS|G|1427
8OEQ|1|AS|C|1428
8OEQ|1|AS|A|1429
8OEQ|1|AS|G|1430
8OEQ|1|AS|A|1431
8OEQ|1|AS|U|1432
8OEQ|1|AS|C|1433
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AU
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AY
- 60S ribosomal protein L4-B
- Chain BG
- 60S ribosomal protein L13
- Chain BI
- 60S ribosomal protein L15-A
- Chain BV
- 60S ribosomal protein L28
- Chain BZ
- 60S ribosomal protein L32
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