J5_8OH6_009
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGAAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 8OH6|1|AS|A|717, 8OH6|1|AS|A|780, 8OH6|1|AS|G|781
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8OH6_009 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0873
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8OH6|1|AS|C|673
8OH6|1|AS|G|674
8OH6|1|AS|A|675
8OH6|1|AS|G|676
*
8OH6|1|AS|C|700
8OH6|1|AS|G|701
8OH6|1|AS|U|702
8OH6|1|AS|A|703
8OH6|1|AS|A|704
*
8OH6|1|AS|U|711
8OH6|1|AS|G|712
8OH6|1|AS|A|713
8OH6|1|AS|A|714
8OH6|1|AS|C|715
8OH6|1|AS|G|716
8OH6|1|AS|A|717
8OH6|1|AS|A|718
8OH6|1|AS|G|719
*
8OH6|1|AS|C|745
8OH6|1|AS|G|746
8OH6|1|AS|A|747
*
8OH6|1|AS|U|778
8OH6|1|AS|A|779
8OH6|1|AS|A|780
8OH6|1|AS|G|781
8OH6|1|AS|A|782
8OH6|1|AS|G|783
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AY
- 60S ribosomal protein L4-B
- Chain BG
- 60S ribosomal protein L13
- Chain BL
- 60S ribosomal protein L18-A
- Chain BO
- 60S ribosomal protein L21-A
- Chain BV
- 60S ribosomal protein L28
- Chain BW
- 60S ribosomal protein L29
- Chain CD
- 60S ribosomal protein L36
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