J5_8OI5_005

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

8OI5|1|1|A|2382, 8OI5|1|1|A|2789, 8OI5|1|1|G|2846, 8OI5|1|1|U|2950, 8OI5|1|1|U|2951

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OI5|1|1|A|2377
8OI5|1|1|G|2378
8OI5|1|1|A|2379
8OI5|1|1|A|2380
8OI5|1|1|G|2381
8OI5|1|1|A|2382
8OI5|1|1|C|2383
8OI5|1|1|C|2384
*
8OI5|1|1|G|2787
8OI5|1|1|G|2788
8OI5|1|1|A|2789
8OI5|1|1|U|2790
8OI5|1|1|A|2791
8OI5|1|1|A|2792
8OI5|1|1|C|2793
8OI5|1|1|U|2794
8OI5|1|1|G|2795
*
8OI5|1|1|C|2839
8OI5|1|1|U|2840
8OI5|1|1|U|2841
8OI5|1|1|C|2842
8OI5|1|1|G|2843
8OI5|1|1|A|2844
8OI5|1|1|U|2845
8OI5|1|1|G|2846
8OI5|1|1|U|2847
8OI5|1|1|C|2848
*
8OI5|1|1|G|2923
8OI5|1|1|G|2924
8OI5|1|1|U|2925
8OI5|1|1|U|2926
8OI5|1|1|U|2927
8OI5|1|1|A|2928
8OI5|1|1|G|2929
*
8OI5|1|1|U|2947
8OI5|1|1|A|2948
8OI5|1|1|G|2949
8OI5|1|1|U|2950
8OI5|1|1|U|2951
8OI5|1|1|U|2952

Current chains

Chain 1

25S

Nearby chains

Chain AB

60S ribosomal protein L28

Chain AC

60S ribosomal protein L29

Chain j

60S ribosomal protein L2-B

Chain k

60S ribosomal protein L3

Chain l

60S ribosomal protein L4-B