J5_8OI5_020

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUAGUACCUUACUACUU*AUGCUUAAAAU*AUG*CGAAUC*GAUGGUU

Length

44 nucleotides

Bulged bases

8OI5|1|CM|U|128, 8OI5|1|CM|U|132, 8OI5|1|CM|U|133, 8OI5|1|CM|C|138, 8OI5|1|CM|U|139, 8OI5|1|CM|U|176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OI5|1|CM|A|124
8OI5|1|CM|U|125
8OI5|1|CM|A|126
8OI5|1|CM|G|127
8OI5|1|CM|U|128
8OI5|1|CM|A|129
8OI5|1|CM|C|130
8OI5|1|CM|C|131
8OI5|1|CM|U|132
8OI5|1|CM|U|133
8OI5|1|CM|A|134
8OI5|1|CM|C|135
8OI5|1|CM|U|136
8OI5|1|CM|A|137
8OI5|1|CM|C|138
8OI5|1|CM|U|139
8OI5|1|CM|U|140
*
8OI5|1|CM|A|171
8OI5|1|CM|U|172
8OI5|1|CM|G|173
8OI5|1|CM|C|174
8OI5|1|CM|U|175
8OI5|1|CM|U|176
8OI5|1|CM|A|177
8OI5|1|CM|A|178
8OI5|1|CM|A|179
8OI5|1|CM|A|180
8OI5|1|CM|U|181
*
8OI5|1|CM|A|200
8OI5|1|CM|U|201
8OI5|1|CM|G|202
*
8OI5|1|CM|C|261
8OI5|1|CM|G|262
8OI5|1|CM|A|263
8OI5|1|CM|A|264
8OI5|1|CM|U|265
8OI5|1|CM|C|266
*
8OI5|1|CM|G|285
8OI5|1|CM|A|286
8OI5|1|CM|U|287
8OI5|1|CM|G|288
8OI5|1|CM|G|289
8OI5|1|CM|U|290
8OI5|1|CM|U|291

Current chains

Chain CM

18S

Nearby chains

Chain CR

40S ribosomal protein S4

Chain CT

40S ribosomal protein S6

Chain CV

40S ribosomal protein S8