J5_8OIQ_005
3D structure
- PDB id
- 8OIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUUA*UUCG*CU*AG*CGGAACAA
- Length
- 20 nucleotides
- Bulged bases
- 8OIQ|1|B8|U|1071, 8OIQ|1|B8|G|1252, 8OIQ|1|B8|G|1253, 8OIQ|1|B8|A|1254
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8OIQ_005 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.232
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8OIQ|1|B8|U|1069
8OIQ|1|B8|U|1070
8OIQ|1|B8|U|1071
8OIQ|1|B8|A|1072
*
8OIQ|1|B8|U|1143
8OIQ|1|B8|U|1144
8OIQ|1|B8|C|1145
8OIQ|1|B8|G|1146
*
8OIQ|1|B8|C|1158
8OIQ|1|B8|U|1159
*
8OIQ|1|B8|A|1181
8OIQ|1|B8|G|1182
*
8OIQ|1|B8|C|1251
8OIQ|1|B8|G|1252
8OIQ|1|B8|G|1253
8OIQ|1|B8|A|1254
8OIQ|1|B8|A|1255
8OIQ|1|B8|C|1256
8OIQ|1|B8|A|1257
8OIQ|1|B8|A|1258
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain B7
- E-site tRNA
- Chain BD
- Mitochondrial ribosomal protein L27
- Chain BE
- Mitochondrial ribosomal protein L28
- Chain BK
- 39S ribosomal protein L35, mitochondrial
- Chain BL
- Mitochondrial ribosomal protein L2
- Chain BT
- 39S ribosomal protein L15, mitochondrial
Coloring options: