J5_8OIR_003
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAAGACC*GGAUAACA*UCGAUGUU*AGUUCAG*CGGUUU
- Length
- 37 nucleotides
- Bulged bases
- 8OIR|1|B8|A|1055, 8OIR|1|B8|A|1265, 8OIR|1|B8|U|1266, 8OIR|1|B8|G|1322, 8OIR|1|B8|U|1426, 8OIR|1|B8|U|1427
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OIR|1|B8|A|1050
8OIR|1|B8|G|1051
8OIR|1|B8|A|1052
8OIR|1|B8|A|1053
8OIR|1|B8|G|1054
8OIR|1|B8|A|1055
8OIR|1|B8|C|1056
8OIR|1|B8|C|1057
*
8OIR|1|B8|G|1263
8OIR|1|B8|G|1264
8OIR|1|B8|A|1265
8OIR|1|B8|U|1266
8OIR|1|B8|A|1267
8OIR|1|B8|A|1268
8OIR|1|B8|C|1269
8OIR|1|B8|A|1270
*
8OIR|1|B8|U|1317
8OIR|1|B8|C|1318
8OIR|1|B8|G|1319
8OIR|1|B8|A|1320
8OIR|1|B8|U|1321
8OIR|1|B8|G|1322
8OIR|1|B8|U|1323
8OIR|1|B8|U|1324
*
8OIR|1|B8|A|1399
8OIR|1|B8|G|1400
8OIR|1|B8|U|1401
8OIR|1|B8|U|1402
8OIR|1|B8|C|1403
8OIR|1|B8|A|1404
8OIR|1|B8|G|1405
*
8OIR|1|B8|C|1423
8OIR|1|B8|G|1424
8OIR|1|B8|G|1425
8OIR|1|B8|U|1426
8OIR|1|B8|U|1427
8OIR|1|B8|U|1428
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain AG
- P-site Met-tRNA(Met)
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain BA
- 39S ribosomal protein L22, mitochondrial
- Chain BD
- 39S ribosomal protein L27, mitochondrial
- Chain BH
- 39S ribosomal protein L32, mitochondrial
- Chain BM
- 39S ribosomal protein L3, mitochondrial
- Chain BN
- 39S ribosomal protein L4, mitochondrial
- Chain BT
- 39S ribosomal protein L15, mitochondrial
- Chain BU
- 39S ribosomal protein L16, mitochondrial
- Chain Bu
- 39S ribosomal protein L45, mitochondrial
Coloring options: