Loop J5_8OVE

3D structure

PDB id: 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
Description: CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å

Loop

Sequence: CU(PSU)GU*AAAUAG*CAAUGGGG*CAAUAUCGAGUAACAAUUGG*CCAAAAG
Length: 46 nucleotides
Bulged bases: 8OVE|1|AA|A|634
QA status: Modified nucleotides: PSU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8OVE|1|AA|C|59
8OVE|1|AA|U|60
8OVE|1|AA|PSU|61
8OVE|1|AA|G|62
8OVE|1|AA|U|63
*
8OVE|1|AA|A|571
8OVE|1|AA|A|572
8OVE|1|AA|A|573
8OVE|1|AA|U|574
8OVE|1|AA|A|575
8OVE|1|AA|G|576
*
8OVE|1|AA|C|608
8OVE|1|AA|A|609
8OVE|1|AA|A|610
8OVE|1|AA|U|611
8OVE|1|AA|G|612
8OVE|1|AA|G|613
8OVE|1|AA|G|614
8OVE|1|AA|G|615
*
8OVE|1|AA|C|632
8OVE|1|AA|A|633
8OVE|1|AA|A|634
8OVE|1|AA|U|635
8OVE|1|AA|A|636
8OVE|1|AA|U|637
8OVE|1|AA|C|638
8OVE|1|AA|G|639
8OVE|1|AA|A|640
8OVE|1|AA|G|641
8OVE|1|AA|U|642
8OVE|1|AA|A|643
8OVE|1|AA|A|644
8OVE|1|AA|C|645
8OVE|1|AA|A|646
8OVE|1|AA|A|647
8OVE|1|AA|U|648
8OVE|1|AA|U|649
8OVE|1|AA|G|650
8OVE|1|AA|G|651
*
8OVE|1|AA|C|691
8OVE|1|AA|C|692
8OVE|1|AA|A|693
8OVE|1|AA|A|694
8OVE|1|AA|A|695
8OVE|1|AA|A|696
8OVE|1|AA|G|697

Current chains

Chain AA: SSU rRNA

Nearby chains

Chain A6: Probable 40S ribosomal protein S9
Chain AS: 40S ribosomal protein S23, putative
Chain AT: 40S ribosomal protein S24
Chain AY: 40S ribosomal protein S30

J5_8OVE_001