J5_8OVE_003
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AGG*CGUUGA(A2M)G*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8OVE|1|BC|U|38
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8OVE_003 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1422
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.2
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
8OVE|1|BA|A|22
8OVE|1|BA|G|23
8OVE|1|BA|G|24
*
8OVE|1|BC|C|35
8OVE|1|BC|G|36
8OVE|1|BC|U|37
8OVE|1|BC|U|38
8OVE|1|BC|G|39
8OVE|1|BC|A|40
8OVE|1|BC|A2M|41
8OVE|1|BC|G|42
*
8OVE|1|BC|U|101
8OVE|1|BC|G|102
8OVE|1|BC|A|103
8OVE|1|BC|A|104
8OVE|1|BC|C|105
8OVE|1|BC|G|106
*
8OVE|1|BC|C|114
8OVE|1|BC|G|115
*
8OVE|1|BC|C|148
8OVE|1|BC|A|149
8OVE|1|BC|U|150
Current chains
- Chain BA
- LUS_alpha rRNA
- Chain BC
- 5.8S rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- Ribosomal protein L15
- Chain BX
- 60S ribosomal protein L23a
- Chain Bk
- 60S ribosomal protein L35, putative
- Chain Bn
- Ribosomal protein L37
Coloring options: