J5_8OVE_005
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAUUU*A(OMG)UUGUUCGGUCAC*GAGAACC*GAAUUGCAUG*CUGCAGACCGUAC
- Length
- 49 nucleotides
- Bulged bases
- 8OVE|1|BA|U|1711
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OVE|1|BA|G|1680
8OVE|1|BA|A|1681
8OVE|1|BA|U|1682
8OVE|1|BA|U|1683
8OVE|1|BA|U|1684
*
8OVE|1|BA|A|1708
8OVE|1|BA|OMG|1709
8OVE|1|BA|U|1710
8OVE|1|BA|U|1711
8OVE|1|BA|G|1712
8OVE|1|BA|U|1713
8OVE|1|BA|U|1714
8OVE|1|BA|C|1715
8OVE|1|BA|G|1716
8OVE|1|BA|G|1717
8OVE|1|BA|U|1718
8OVE|1|BA|C|1719
8OVE|1|BA|A|1720
8OVE|1|BA|C|1721
*
8OVE|1|BA|G|1828
8OVE|1|BA|A|1829
8OVE|1|BA|G|1830
8OVE|1|BA|A|1831
8OVE|1|BA|A|1832
8OVE|1|BA|C|1833
8OVE|1|BA|C|1834
*
8OVE|1|BA|G|1854
8OVE|1|BA|A|1855
8OVE|1|BA|A|1856
8OVE|1|BA|U|1857
8OVE|1|BA|U|1858
8OVE|1|BA|G|1859
8OVE|1|BA|C|1860
8OVE|1|BA|A|1861
8OVE|1|BA|U|1862
8OVE|1|BA|G|1863
*
8OVE|1|BB|C|7
8OVE|1|BB|U|8
8OVE|1|BB|G|9
8OVE|1|BB|C|10
8OVE|1|BB|A|11
8OVE|1|BB|G|12
8OVE|1|BB|A|13
8OVE|1|BB|C|14
8OVE|1|BB|C|15
8OVE|1|BB|G|16
8OVE|1|BB|U|17
8OVE|1|BB|A|18
8OVE|1|BB|C|19
Current chains
- Chain BA
- LUS_alpha rRNA
- Chain BB
- LSUb rRNA
Nearby chains
- Chain BC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BE
- SrRNA 1
- Chain BT
- 60S ribosomal protein L19, putative
- Chain BX
- 60S ribosomal protein L23a
- Chain Bj
- 60S ribosomal protein L34, putative
- Chain Bk
- 60S ribosomal protein L35, putative
- Chain Bn
- Ribosomal protein L37
- Chain Bp
- 60S ribosomal protein L38, putative
- Chain Bq
- 60S ribosomal protein L39, putative
Coloring options: