Loop J5_8OVE

3D structure

PDB id: 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
Description: CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å

Loop

Sequence: AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GGUU(PSU)AG*(PSU)GGUUU
Length: 40 nucleotides
Bulged bases: 8OVE|1|BB|A|668, 8OVE|1|BB|A|1271, 8OVE|1|BB|U|1272, 8OVE|1|BB|U|1327, 8OVE|1|BB|G|1328, 8OVE|1|BB|U|1329, 8OVE|1|BB|U|1432, 8OVE|1|BB|U|1433
QA status: Modified nucleotides: OMG, 5MC, PSU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8OVE|1|BB|A|663
8OVE|1|BB|G|664
8OVE|1|BB|A|665
8OVE|1|BB|A|666
8OVE|1|BB|G|667
8OVE|1|BB|A|668
8OVE|1|BB|C|669
8OVE|1|BB|C|670
*
8OVE|1|BB|OMG|1269
8OVE|1|BB|G|1270
8OVE|1|BB|A|1271
8OVE|1|BB|U|1272
8OVE|1|BB|A|1273
8OVE|1|BB|A|1274
8OVE|1|BB|C|1275
8OVE|1|BB|U|1276
8OVE|1|BB|G|1277
*
8OVE|1|BB|C|1321
8OVE|1|BB|U|1322
8OVE|1|BB|U|1323
8OVE|1|BB|5MC|1324
8OVE|1|BB|G|1325
8OVE|1|BB|A|1326
8OVE|1|BB|U|1327
8OVE|1|BB|G|1328
8OVE|1|BB|U|1329
8OVE|1|BB|C|1330
*
8OVE|1|BB|G|1405
8OVE|1|BB|G|1406
8OVE|1|BB|U|1407
8OVE|1|BB|U|1408
8OVE|1|BB|PSU|1409
8OVE|1|BB|A|1410
8OVE|1|BB|G|1411
*
8OVE|1|BB|PSU|1429
8OVE|1|BB|G|1430
8OVE|1|BB|G|1431
8OVE|1|BB|U|1432
8OVE|1|BB|U|1433
8OVE|1|BB|U|1434

Current chains

Chain BB: LSUb rRNA

Nearby chains

Chain BA: Large subunit ribosomal RNA; LSU rRNA
Chain Bd: 60S ribosomal protein L29
Chain Be: 60S ribosomal protein L2, putative
Chain Bf: Ribosomal protein L3, mitochondrial, putative
Chain Br: 60S ribosomal protein L4

J5_8OVE_006