J5_8OVE_007
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- (PSU)UGA*UUUG*UA*(OMU)(OMG)*CAGAAUA
- Length
- 19 nucleotides
- Bulged bases
- 8OVE|1|BB|G|682, 8OVE|1|BB|A|1253, 8OVE|1|BB|G|1254, 8OVE|1|BB|A|1255, 8OVE|1|BB|A|1256, 8OVE|1|BB|U|1257
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8OVE_007 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3229
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.2
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8OVE|1|BB|PSU|680
8OVE|1|BB|U|681
8OVE|1|BB|G|682
8OVE|1|BB|A|683
*
8OVE|1|BB|U|1054
8OVE|1|BB|U|1055
8OVE|1|BB|U|1056
8OVE|1|BB|G|1057
*
8OVE|1|BB|U|1070
8OVE|1|BB|A|1071
*
8OVE|1|BB|OMU|1093
8OVE|1|BB|OMG|1094
*
8OVE|1|BB|C|1252
8OVE|1|BB|A|1253
8OVE|1|BB|G|1254
8OVE|1|BB|A|1255
8OVE|1|BB|A|1256
8OVE|1|BB|U|1257
8OVE|1|BB|A|1258
Current chains
- Chain BB
- LSUb rRNA
Nearby chains
- Chain AB
- E-SITE TRNA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- Ribosomal protein L15
- Chain BU
- 60S ribosomal protein L21E, putative
- Chain Bb
- 60S ribosomal protein L27a
- Chain Bd
- 60S ribosomal protein L29
- Chain Be
- 60S ribosomal protein L2, putative
- Chain Bt
- 60S ribosomal protein L44
Coloring options: