J5_8OVE_008
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAUG*CGCAUGGC*GAGGGA*UACCAC*GGCAG
- Length
- 29 nucleotides
- Bulged bases
- 8OVE|1|AA|U|84, 8OVE|1|AA|A|118, 8OVE|1|AA|C|517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OVE|1|AA|C|82
8OVE|1|AA|A|83
8OVE|1|AA|U|84
8OVE|1|AA|G|85
*
8OVE|1|AA|C|115
8OVE|1|AA|G|116
8OVE|1|AA|C|117
8OVE|1|AA|A|118
8OVE|1|AA|U|119
8OVE|1|AA|G|120
8OVE|1|AA|G|121
8OVE|1|AA|C|122
*
8OVE|1|AA|G|479
8OVE|1|AA|A|480
8OVE|1|AA|G|481
8OVE|1|AA|G|482
8OVE|1|AA|G|483
8OVE|1|AA|A|484
*
8OVE|1|AA|U|499
8OVE|1|AA|A|500
8OVE|1|AA|C|501
8OVE|1|AA|C|502
8OVE|1|AA|A|503
8OVE|1|AA|C|504
*
8OVE|1|AA|G|515
8OVE|1|AA|G|516
8OVE|1|AA|C|517
8OVE|1|AA|A|518
8OVE|1|AA|G|519
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A1
- 40S ribosomal protein S4
- Chain A3
- 40S ribosomal protein S6
- Chain A5
- 40S ribosomal protein S8
- Chain A6
- Probable 40S ribosomal protein S9
- Chain AT
- 40S ribosomal protein S24
- Chain BW
- 60S ribosomal protein L23, putative
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