Loop J5_8OZ0

3D structure

PDB id: 8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of a human 48S translation initiation complex with eIF4F and eIF4A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

Loop

Sequence: CAUGUCUGAGUACGCA*UGAAACUGCGAAUGGC*GAG*CAC*GGCAG
Length: 43 nucleotides
Bulged bases: 8OZ0|1|W|U|55, 8OZ0|1|W|G|60, 8OZ0|1|W|A|61, 8OZ0|1|W|A|64, 8OZ0|1|W|C|65, 8OZ0|1|W|C|67, 8OZ0|1|W|A|92, 8OZ0|1|W|C|472
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8OZ0|1|W|C|53
8OZ0|1|W|A|54
8OZ0|1|W|U|55
8OZ0|1|W|G|56
8OZ0|1|W|U|57
8OZ0|1|W|C|58
8OZ0|1|W|U|59
8OZ0|1|W|G|60
8OZ0|1|W|A|61
8OZ0|1|W|G|62
8OZ0|1|W|U|63
8OZ0|1|W|A|64
8OZ0|1|W|C|65
8OZ0|1|W|G|66
8OZ0|1|W|C|67
8OZ0|1|W|A|68
*
8OZ0|1|W|U|81
8OZ0|1|W|G|82
8OZ0|1|W|A|83
8OZ0|1|W|A|84
8OZ0|1|W|A|85
8OZ0|1|W|C|86
8OZ0|1|W|U|87
8OZ0|1|W|G|88
8OZ0|1|W|C|89
8OZ0|1|W|G|90
8OZ0|1|W|A|91
8OZ0|1|W|A|92
8OZ0|1|W|U|93
8OZ0|1|W|G|94
8OZ0|1|W|G|95
8OZ0|1|W|C|96
*
8OZ0|1|W|G|434
8OZ0|1|W|A|435
8OZ0|1|W|G|436
*
8OZ0|1|W|C|457
8OZ0|1|W|A|458
8OZ0|1|W|C|459
*
8OZ0|1|W|G|470
8OZ0|1|W|G|471
8OZ0|1|W|C|472
8OZ0|1|W|A|473
8OZ0|1|W|G|474

Current chains

Chain W: 18S rRNA

Nearby chains

Chain S: 40S ribosomal protein S6
Chain Y: 40S ribosomal protein S4, X isoform
Chain Z: 40S ribosomal protein S9
Chain d: 40S ribosomal protein S8
Chain e: 40S ribosomal protein S24

J5_8OZ0_003