J5_8OZ0_005
3D structure
- PDB id
- 8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translation initiation complex with eIF4F and eIF4A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUCUUGG*CCC*GCGUU*AUGGAAUAGG*CAUGAU
- Length
- 31 nucleotides
- Bulged bases
- 8OZ0|1|W|C|687, 8OZ0|1|W|U|688, 8OZ0|1|W|U|871, 8OZ0|1|W|G|873, 8OZ0|1|W|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OZ0|1|W|A|685
8OZ0|1|W|U|686
8OZ0|1|W|C|687
8OZ0|1|W|U|688
8OZ0|1|W|U|689
8OZ0|1|W|G|690
8OZ0|1|W|G|691
*
8OZ0|1|W|C|739
8OZ0|1|W|C|740
8OZ0|1|W|C|746
*
8OZ0|1|W|G|796
8OZ0|1|W|C|797
8OZ0|1|W|G|798
8OZ0|1|W|U|799
8OZ0|1|W|U|800
*
8OZ0|1|W|A|865
8OZ0|1|W|U|866
8OZ0|1|W|G|867
8OZ0|1|W|G|868
8OZ0|1|W|A|869
8OZ0|1|W|A|870
8OZ0|1|W|U|871
8OZ0|1|W|A|872
8OZ0|1|W|G|873
8OZ0|1|W|G|874
*
8OZ0|1|W|C|912
8OZ0|1|W|A|913
8OZ0|1|W|U|914
8OZ0|1|W|G|915
8OZ0|1|W|A|916
8OZ0|1|W|U|917
Current chains
- Chain W
- 18S rRNA
Nearby chains
- Chain L
- 40S ribosomal protein S7
- Chain V
- 40S ribosomal protein S13
- Chain X
- 40S ribosomal protein S11
- Chain Y
- 40S ribosomal protein S4, X isoform
- Chain a
- 40S ribosomal protein S23
- Chain c
- 40S ribosomal protein S15a
Coloring options: