J5_8P09_003
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8P09|1|2|U|55, 8P09|1|2|A|92, 8P09|1|2|C|462
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8P09_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1048
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8P09|1|2|C|53
8P09|1|2|A|54
8P09|1|2|U|55
8P09|1|2|G|56
*
8P09|1|2|C|89
8P09|1|2|G|90
8P09|1|2|A|91
8P09|1|2|A|92
8P09|1|2|U|93
8P09|1|2|G|94
8P09|1|2|G|95
8P09|1|2|C|96
*
8P09|1|2|G|424
8P09|1|2|A|425
8P09|1|2|G|426
*
8P09|1|2|C|447
8P09|1|2|A|448
8P09|1|2|C|449
*
8P09|1|2|G|460
8P09|1|2|G|461
8P09|1|2|C|462
8P09|1|2|A|463
8P09|1|2|G|464
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S4
- Chain I
- 40S ribosomal protein S6
- Chain K
- 40S ribosomal protein S8
- Chain L
- 40S ribosomal protein S9
- Chain a
- 40S ribosomal protein S24
- Chain k
- ATP binding cassette subfamily E member 1
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