J5_8P4V_015
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU
- Length
- 38 nucleotides
- Bulged bases
- 8P4V|1|AR|A|2404, 8P4V|1|AR|A|2817, 8P4V|1|AR|U|2818, 8P4V|1|AR|U|2873, 8P4V|1|AR|G|2874, 8P4V|1|AR|U|2954, 8P4V|1|AR|U|2978, 8P4V|1|AR|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8P4V|1|AR|A|2399
8P4V|1|AR|G|2400
8P4V|1|AR|A|2401
8P4V|1|AR|A|2402
8P4V|1|AR|G|2403
8P4V|1|AR|A|2404
8P4V|1|AR|C|2405
8P4V|1|AR|C|2406
*
8P4V|1|AR|G|2815
8P4V|1|AR|G|2816
8P4V|1|AR|A|2817
8P4V|1|AR|U|2818
8P4V|1|AR|A|2819
8P4V|1|AR|A|2820
8P4V|1|AR|C|2821
8P4V|1|AR|U|2822
8P4V|1|AR|G|2823
*
8P4V|1|AR|C|2867
8P4V|1|AR|U|2868
8P4V|1|AR|U|2869
8P4V|1|AR|C|2870
8P4V|1|AR|G|2871
8P4V|1|AR|A|2872
8P4V|1|AR|U|2873
8P4V|1|AR|G|2874
8P4V|1|AR|U|2875
*
8P4V|1|AR|G|2952
8P4V|1|AR|U|2953
8P4V|1|AR|U|2954
8P4V|1|AR|U|2955
8P4V|1|AR|A|2956
8P4V|1|AR|G|2957
*
8P4V|1|AR|U|2975
8P4V|1|AR|A|2976
8P4V|1|AR|G|2977
8P4V|1|AR|U|2978
8P4V|1|AR|U|2979
8P4V|1|AR|U|2980
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CD
- 60S ribosomal protein L2-A
- Chain CE
- 60S ribosomal protein L3
- Chain CF
- 60S ribosomal protein L4-A
- Chain CR
- 60S ribosomal protein L17-A
- Chain DC
- 60S ribosomal protein L28
- Chain DD
- 60S ribosomal protein L29
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