J5_8P4V_017

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

8P4V|1|sR|A|541, 8P4V|1|sR|C|543, 8P4V|1|sR|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P4V|1|sR|C|31
8P4V|1|sR|U|32
8P4V|1|sR|U|33
8P4V|1|sR|G|34
8P4V|1|sR|U|35
*
8P4V|1|sR|A|473
8P4V|1|sR|A|474
8P4V|1|sR|A|475
8P4V|1|sR|U|476
8P4V|1|sR|A|477
8P4V|1|sR|A|478
8P4V|1|sR|C|479
*
8P4V|1|sR|G|509
8P4V|1|sR|G|510
8P4V|1|sR|A|511
8P4V|1|sR|A|512
8P4V|1|sR|U|513
8P4V|1|sR|G|514
8P4V|1|sR|A|515
8P4V|1|sR|G|516
*
8P4V|1|sR|C|536
8P4V|1|sR|G|537
8P4V|1|sR|A|538
8P4V|1|sR|G|539
8P4V|1|sR|G|540
8P4V|1|sR|A|541
8P4V|1|sR|A|542
8P4V|1|sR|C|543
8P4V|1|sR|A|544
8P4V|1|sR|A|545
8P4V|1|sR|U|546
*
8P4V|1|sR|A|592
8P4V|1|sR|U|593
8P4V|1|sR|A|594
8P4V|1|sR|G|595

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A