J5_8P8M_002
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8P8M|1|A|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8P8M_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0714
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8P8M|1|A|G|658
8P8M|1|A|G|659
8P8M|1|A|A|660
8P8M|1|A|G|661
8P8M|1|A|U|662
8P8M|1|A|C|663
*
8P8M|1|A|G|799
8P8M|1|A|G|800
8P8M|1|A|A|801
8P8M|1|A|C|802
*
8P8M|1|A|G|941
8P8M|1|A|U|942
8P8M|1|A|U|943
8P8M|1|A|C|944
*
8P8M|1|A|G|1375
8P8M|1|A|C|1376
*
8P8M|1|A|G|1431
8P8M|1|A|C|1432
8P8M|1|A|A|1433
8P8M|1|A|G|1434
8P8M|1|A|A|1435
8P8M|1|A|U|1436
8P8M|1|A|C|1437
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain JT
- 60S ribosomal protein L13-A
- Chain JV
- 60S ribosomal protein L15-A
- Chain LD
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LH
- 60S ribosomal protein L4-A
- Chain RA
- 60S ribosomal protein L28
- Chain RE
- 60S ribosomal protein L32
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