J5_8P8M_003
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 8P8M|1|A|U|719, 8P8M|1|A|A|784, 8P8M|1|A|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8P8M_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0801
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8P8M|1|A|C|675
8P8M|1|A|G|676
8P8M|1|A|A|677
8P8M|1|A|G|678
*
8P8M|1|A|C|702
8P8M|1|A|G|703
8P8M|1|A|U|704
8P8M|1|A|A|705
8P8M|1|A|A|706
*
8P8M|1|A|U|713
8P8M|1|A|G|714
8P8M|1|A|A|715
8P8M|1|A|A|716
8P8M|1|A|C|717
8P8M|1|A|G|718
8P8M|1|A|U|719
8P8M|1|A|A|720
8P8M|1|A|G|721
*
8P8M|1|A|C|749
8P8M|1|A|G|750
8P8M|1|A|A|751
*
8P8M|1|A|U|782
8P8M|1|A|A|783
8P8M|1|A|A|784
8P8M|1|A|G|785
8P8M|1|A|A|786
8P8M|1|A|G|787
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain JT
- 60S ribosomal protein L13-A
- Chain LH
- 60S ribosomal protein L4-A
- Chain QP
- 60S ribosomal protein L18-A
- Chain RA
- 60S ribosomal protein L28
- Chain RB
- 60S ribosomal protein L29
- Chain RI
- 60S ribosomal protein L36-A
Coloring options: