J5_8P9A_016

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

8P9A|1|sR|A|541, 8P9A|1|sR|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_02492.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-F-F-cWW-F-cWW-F-cWW-F-cWW-F-F-tHS-cWW-F-F

Number of instances in this motif group

2

Unit IDs

8P9A|1|sR|C|31
8P9A|1|sR|U|32
8P9A|1|sR|U|33
8P9A|1|sR|G|34
8P9A|1|sR|U|35
*
8P9A|1|sR|A|473
8P9A|1|sR|A|474
8P9A|1|sR|A|475
8P9A|1|sR|U|476
8P9A|1|sR|A|477
8P9A|1|sR|A|478
8P9A|1|sR|C|479
*
8P9A|1|sR|G|509
8P9A|1|sR|G|510
8P9A|1|sR|A|511
8P9A|1|sR|A|512
8P9A|1|sR|U|513
8P9A|1|sR|G|514
8P9A|1|sR|A|515
8P9A|1|sR|G|516
*
8P9A|1|sR|C|536
8P9A|1|sR|G|537
8P9A|1|sR|A|538
8P9A|1|sR|G|539
8P9A|1|sR|G|540
8P9A|1|sR|A|541
8P9A|1|sR|A|542
8P9A|1|sR|C|543
8P9A|1|sR|A|544
8P9A|1|sR|A|545
8P9A|1|sR|U|546
*
8P9A|1|sR|A|592
8P9A|1|sR|U|593
8P9A|1|sR|A|594
8P9A|1|sR|G|595

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A