J5_8PHJ_003

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8PHJ|1|A|A|60, 8PHJ|1|A|A|109, 8PHJ|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8PHJ_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.097

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8PHJ|1|A|C|58
8PHJ|1|A|A|59
8PHJ|1|A|A|60
8PHJ|1|A|G|61
*
8PHJ|1|A|C|106
8PHJ|1|A|G|107
8PHJ|1|A|G|108
8PHJ|1|A|A|109
8PHJ|1|A|C|110
8PHJ|1|A|G|111
8PHJ|1|A|G|112
8PHJ|1|A|G|113
*
8PHJ|1|A|C|314
8PHJ|1|A|A|315
8PHJ|1|A|C|316
*
8PHJ|1|A|G|337
8PHJ|1|A|A|338
8PHJ|1|A|C|339
*
8PHJ|1|A|G|350
8PHJ|1|A|G|351
8PHJ|1|A|C|352
8PHJ|1|A|A|353
8PHJ|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20

Chain j

Large ribosomal subunit protein uL14