3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
8PHJ|1|a|U|1758, 8PHJ|1|a|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8PHJ_007 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.0573
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8PHJ|1|a|G|1674
8PHJ|1|a|C|1675
8PHJ|1|a|A|1676
8PHJ|1|a|A|1677
8PHJ|1|a|A|1678
8PHJ|1|a|A|1679
8PHJ|1|a|U|1680
8PHJ|1|a|G|1681
8PHJ|1|a|G|1682
*
8PHJ|1|a|C|1706
8PHJ|1|a|G|1707
*
8PHJ|1|a|U|1751
8PHJ|1|a|C|1752
*
8PHJ|1|a|G|1756
8PHJ|1|a|A|1757
8PHJ|1|a|U|1758
8PHJ|1|a|A|1759
8PHJ|1|a|C|1760
8PHJ|1|a|C|1761
8PHJ|1|a|A|1762
8PHJ|1|a|G|1763
8PHJ|1|a|C|1764
*
8PHJ|1|a|G|1988
8PHJ|1|a|G|1989
8PHJ|1|a|C|1990

Current chains

Chain a
23S rRNA (2862-MER)

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain d
Large ribosomal subunit protein uL3
Chain j
Large ribosomal subunit protein uL14
Chain o
Large ribosomal subunit protein bL19

Coloring options:


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