J5_8PJ6_003
3D structure
- PDB id
- 8PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8PJ6|1|A|A|92, 8PJ6|1|A|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8PJ6_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0571
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8PJ6|1|A|C|53
8PJ6|1|A|A|54
8PJ6|1|A|U|55
8PJ6|1|A|G|56
*
8PJ6|1|A|C|89
8PJ6|1|A|G|90
8PJ6|1|A|A|91
8PJ6|1|A|A|92
8PJ6|1|A|U|93
8PJ6|1|A|G|94
8PJ6|1|A|G|95
8PJ6|1|A|C|96
*
8PJ6|1|A|G|434
8PJ6|1|A|A|435
8PJ6|1|A|G|436
*
8PJ6|1|A|C|457
8PJ6|1|A|A|458
8PJ6|1|A|C|459
*
8PJ6|1|A|G|470
8PJ6|1|A|G|471
8PJ6|1|A|C|472
8PJ6|1|A|A|473
8PJ6|1|A|G|474
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain C
- 40S ribosomal protein S4, X isoform
- Chain D
- 40S ribosomal protein S9
- Chain R
- 40S ribosomal protein S8
- Chain S
- 40S ribosomal protein S6
- Chain T
- 40S ribosomal protein S24
Coloring options: