J5_8PKL_001

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8PKL|1|7|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8PKL_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0554

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8PKL|1|7|C|47
8PKL|1|7|G|48
8PKL|1|7|A|49
8PKL|1|7|U|50
8PKL|1|7|G|51
8PKL|1|7|A|52
8PKL|1|7|A|53
8PKL|1|7|G|54
*
8PKL|1|7|C|116
8PKL|1|7|G|117
8PKL|1|7|A|118
8PKL|1|7|A|119
8PKL|1|7|U|120
8PKL|1|7|G|121
*
8PKL|1|7|C|130
8PKL|1|7|A|131
*
8PKL|1|7|U|148
8PKL|1|7|A|149
8PKL|1|7|U|150
*
8PKL|1|7|A|176
8PKL|1|7|G|177
8PKL|1|7|G|178

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L34