J5_8PV6_003

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CGAG*CGUAA*UGAACGUAG*CGA*UAGGAG

Length

27 nucleotides

Bulged bases

8PV6|1|C1|U|707, 8PV6|1|C1|G|767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8PV6_003 not in the Motif Atlas

Homologous match to J5_8P9A_012

Geometric discrepancy: 0.135

The information below is about J5_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_56629.1

Basepair signature

cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8PV6|1|C1|C|663
8PV6|1|C1|G|664
8PV6|1|C1|A|665
8PV6|1|C1|G|666
*
8PV6|1|C1|C|690
8PV6|1|C1|G|691
8PV6|1|C1|U|692
8PV6|1|C1|A|693
8PV6|1|C1|A|694
*
8PV6|1|C1|U|701
8PV6|1|C1|G|702
8PV6|1|C1|A|703
8PV6|1|C1|A|704
8PV6|1|C1|C|705
8PV6|1|C1|G|706
8PV6|1|C1|U|707
8PV6|1|C1|A|708
8PV6|1|C1|G|709
*
8PV6|1|C1|C|731
8PV6|1|C1|G|732
8PV6|1|C1|A|733
*
8PV6|1|C1|U|764
8PV6|1|C1|A|765
8PV6|1|C1|G|766
8PV6|1|C1|G|767
8PV6|1|C1|A|768
8PV6|1|C1|G|769

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain LL

60S ribosomal protein L13

Chain LQ

Ribosomal protein L18-like protein

Chain La

60S ribosomal protein L28-like protein

Chain Lb

60S ribosomal protein L29

Chain Li

60S ribosomal protein L36