J5_8PVK_003
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAGGAG
- Length
- 27 nucleotides
- Bulged bases
- 8PVK|1|C1|U|707, 8PVK|1|C1|G|767
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8PVK_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.1282
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8PVK|1|C1|C|663
8PVK|1|C1|G|664
8PVK|1|C1|A|665
8PVK|1|C1|G|666
*
8PVK|1|C1|C|690
8PVK|1|C1|G|691
8PVK|1|C1|U|692
8PVK|1|C1|A|693
8PVK|1|C1|A|694
*
8PVK|1|C1|U|701
8PVK|1|C1|G|702
8PVK|1|C1|A|703
8PVK|1|C1|A|704
8PVK|1|C1|C|705
8PVK|1|C1|G|706
8PVK|1|C1|U|707
8PVK|1|C1|A|708
8PVK|1|C1|G|709
*
8PVK|1|C1|C|731
8PVK|1|C1|G|732
8PVK|1|C1|A|733
*
8PVK|1|C1|U|764
8PVK|1|C1|A|765
8PVK|1|C1|G|766
8PVK|1|C1|G|767
8PVK|1|C1|A|768
8PVK|1|C1|G|769
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LL
- 60S ribosomal protein L13
- Chain LQ
- Ribosomal protein L18-like protein
- Chain La
- 60S ribosomal protein L28-like protein
- Chain Li
- 60S ribosomal protein L36
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