J5_8Q5I_008
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8Q5I|1|A|A|93, 8Q5I|1|A|C|422
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8Q5I_008 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0371
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8Q5I|1|A|C|54
8Q5I|1|A|A|55
8Q5I|1|A|U|56
8Q5I|1|A|G|57
*
8Q5I|1|A|C|90
8Q5I|1|A|G|91
8Q5I|1|A|A|92
8Q5I|1|A|A|93
8Q5I|1|A|U|94
8Q5I|1|A|G|95
8Q5I|1|A|G|96
8Q5I|1|A|C|97
*
8Q5I|1|A|G|384
8Q5I|1|A|A|385
8Q5I|1|A|G|386
*
8Q5I|1|A|C|407
8Q5I|1|A|A|408
8Q5I|1|A|C|409
*
8Q5I|1|A|G|420
8Q5I|1|A|G|421
8Q5I|1|A|C|422
8Q5I|1|A|A|423
8Q5I|1|A|G|424
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 6
- 60S ribosomal protein L23-A
- Chain F
- 40S ribosomal protein S4
- Chain H
- 40S ribosomal protein S6
- Chain J
- 40S ribosomal protein S8
- Chain K
- Ribosomal protein S4
- Chain Z
- 40S ribosomal protein S24
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