3D structure

PDB id
8QBT (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli ApdP-stalled ribosomal complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
8QBT|1|A|U|1758, 8QBT|1|A|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8QBT_004 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.0358
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8QBT|1|A|G|1674
8QBT|1|A|C|1675
8QBT|1|A|A|1676
8QBT|1|A|A|1677
8QBT|1|A|A|1678
8QBT|1|A|A|1679
8QBT|1|A|U|1680
8QBT|1|A|G|1681
8QBT|1|A|G|1682
*
8QBT|1|A|C|1706
8QBT|1|A|G|1707
*
8QBT|1|A|U|1751
8QBT|1|A|C|1752
*
8QBT|1|A|G|1756
8QBT|1|A|A|1757
8QBT|1|A|U|1758
8QBT|1|A|A|1759
8QBT|1|A|C|1760
8QBT|1|A|C|1761
8QBT|1|A|A|1762
8QBT|1|A|G|1763
8QBT|1|A|C|1764
*
8QBT|1|A|G|1988
8QBT|1|A|G|1989
8QBT|1|A|C|1990

Current chains

Chain A
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain K
Large ribosomal subunit protein uL14
Chain P
Large ribosomal subunit protein bL19
Chain i
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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