3D structure

PDB id
8QBT (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli ApdP-stalled ribosomal complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
UUUA*UUUG*CU*AG*CGGAUAAAA
Length
21 nucleotides
Bulged bases
8QBT|1|A|U|2076, 8QBT|1|A|G|2428, 8QBT|1|A|G|2429, 8QBT|1|A|A|2430, 8QBT|1|A|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8QBT_006 not in the Motif Atlas
Homologous match to J5_9DFE_007
Geometric discrepancy: 0.0649
The information below is about J5_9DFE_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_39529.2
Basepair signature
cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

8QBT|1|A|U|2074
8QBT|1|A|U|2075
8QBT|1|A|U|2076
8QBT|1|A|A|2077
*
8QBT|1|A|U|2243
8QBT|1|A|U|2244
8QBT|1|A|U|2245
8QBT|1|A|G|2246
*
8QBT|1|A|C|2258
8QBT|1|A|U|2259
*
8QBT|1|A|A|2281
8QBT|1|A|G|2282
*
8QBT|1|A|C|2427
8QBT|1|A|G|2428
8QBT|1|A|G|2429
8QBT|1|A|A|2430
8QBT|1|A|U|2431
8QBT|1|A|A|2432
8QBT|1|A|A|2433
8QBT|1|A|A|2434
8QBT|1|A|A|2435

Current chains

Chain A
23S rRNA

Nearby chains

Chain 7
Transfer RNA; tRNA
Chain C
Large ribosomal subunit protein uL2
Chain L
50S ribosomal protein L15
Chain W
Large ribosomal subunit protein bL27
Chain X
Large ribosomal subunit protein bL28
Chain b
Large ribosomal subunit protein bL33
Chain d
Large ribosomal subunit protein bL35

Coloring options:


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