J5_8QCQ_001

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

8QCQ|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8QCQ_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0533

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8QCQ|1|A|C|47
8QCQ|1|A|G|48
8QCQ|1|A|A|49
8QCQ|1|A|U|50
8QCQ|1|A|G|51
8QCQ|1|A|A|52
8QCQ|1|A|A|53
8QCQ|1|A|G|54
*
8QCQ|1|A|C|115
8QCQ|1|A|G|116
8QCQ|1|A|A|117
8QCQ|1|A|A|118
8QCQ|1|A|U|119
8QCQ|1|A|G|120
*
8QCQ|1|A|C|129
8QCQ|1|A|A|130
*
8QCQ|1|A|U|149
8QCQ|1|A|A|150
8QCQ|1|A|U|151
*
8QCQ|1|A|A|178
8QCQ|1|A|A|179
8QCQ|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

Large ribosomal subunit protein uL23