J5_8QPP_007
3D structure
- PDB id
- 8QPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacillus subtilis MutS2-collided disome complex (stalled 70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8QPP|1|X|G|1787, 8QPP|1|X|G|1792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8QPP_007 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.1056
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
8QPP|1|X|G|1719
8QPP|1|X|C|1720
8QPP|1|X|A|1721
8QPP|1|X|A|1722
8QPP|1|X|A|1723
8QPP|1|X|A|1724
8QPP|1|X|U|1725
8QPP|1|X|G|1726
8QPP|1|X|A|1727
*
8QPP|1|X|U|1751
8QPP|1|X|G|1752
*
8QPP|1|X|C|1780
8QPP|1|X|C|1781
*
8QPP|1|X|G|1785
8QPP|1|X|U|1786
8QPP|1|X|G|1787
8QPP|1|X|A|1788
8QPP|1|X|A|1789
8QPP|1|X|U|1790
8QPP|1|X|A|1791
8QPP|1|X|G|1792
8QPP|1|X|G|1793
*
8QPP|1|X|C|2017
8QPP|1|X|A|2018
8QPP|1|X|C|2019
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain a
- Large ribosomal subunit protein uL3
- Chain f
- 50S ribosomal protein L14
- Chain m
- 50S ribosomal protein L19
Coloring options: