3D structure

PDB id
8QSJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UUUA*UUCG*CU*AG*CGGAACAA
Length
20 nucleotides
Bulged bases
8QSJ|1|A|U|2739, 8QSJ|1|A|G|2916, 8QSJ|1|A|G|2917, 8QSJ|1|A|A|2918
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8QSJ_003 not in the Motif Atlas
Homologous match to J5_7A0S_007
Geometric discrepancy: 0.3252
The information below is about J5_7A0S_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_39529.2
Basepair signature
cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

8QSJ|1|A|U|2737
8QSJ|1|A|U|2738
8QSJ|1|A|U|2739
8QSJ|1|A|A|2740
*
8QSJ|1|A|U|2807
8QSJ|1|A|U|2808
8QSJ|1|A|C|2809
8QSJ|1|A|G|2810
*
8QSJ|1|A|C|2822
8QSJ|1|A|U|2823
*
8QSJ|1|A|A|2845
8QSJ|1|A|G|2846
*
8QSJ|1|A|C|2915
8QSJ|1|A|G|2916
8QSJ|1|A|G|2917
8QSJ|1|A|A|2918
8QSJ|1|A|A|2919
8QSJ|1|A|C|2920
8QSJ|1|A|A|2921
8QSJ|1|A|A|2922

Current chains

Chain A
16S rRNA

Nearby chains

Chain 1
39S ribosomal protein L33, mitochondrial
Chain 3
39S ribosomal protein L35, mitochondrial
Chain D
39S ribosomal protein L2, mitochondrial
Chain M
39S ribosomal protein L15, mitochondrial
Chain W
39S ribosomal protein L27, mitochondrial
Chain X
39S ribosomal protein L28, mitochondrial
Chain x
5-methylcytosine rRNA methyltransferase NSUN4

Coloring options:


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