J5_8QYX_002
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)
- Length
- 24 nucleotides
- Bulged bases
- 8QYX|1|A2|C|2289, 8QYX|1|A2|U|2350
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8QYX_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0551
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8QYX|1|A2|G|1335
8QYX|1|A2|G|1336
8QYX|1|A2|A|1337
8QYX|1|A2|G|1338
8QYX|1|A2|U|1339
8QYX|1|A2|OMC|1340
*
8QYX|1|A2|G|1516
8QYX|1|A2|G|1517
8QYX|1|A2|A|1518
8QYX|1|A2|C|1519
*
8QYX|1|A2|G|1658
8QYX|1|A2|U|1659
8QYX|1|A2|U|1660
8QYX|1|A2|C|1661
*
8QYX|1|A2|G|2288
8QYX|1|A2|C|2289
8QYX|1|A2|C|2290
*
8QYX|1|A2|G|2345
8QYX|1|A2|C|2346
8QYX|1|A2|A|2347
8QYX|1|A2|G|2348
8QYX|1|A2|A|2349
8QYX|1|A2|U|2350
8QYX|1|A2|OMC|2351
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F1
- 60S ribosomal protein L13
- Chain F2
- 60S ribosomal protein L4
- Chain H1
- 60S ribosomal protein L15
- Chain U1
- Large ribosomal subunit protein uL15
- Chain Y1
- 60S ribosomal protein L32
- Chain k1
- 60S ribosomal protein L28
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