J5_8QYX_003
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8QYX|1|A2|G|3620, 8QYX|1|A2|G|3625
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8QYX_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1021
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QYX|1|A2|G|2855
8QYX|1|A2|C|2856
8QYX|1|A2|A|2857
8QYX|1|A2|A|2858
8QYX|1|A2|G|2859
8QYX|1|A2|C|2860
8QYX|1|A2|OMC|2861
8QYX|1|A2|G|2862
8QYX|1|A2|G|2863
*
8QYX|1|A2|U|2887
8QYX|1|A2|G|2888
*
8QYX|1|A2|U|3613
8QYX|1|A2|G|3614
*
8QYX|1|A2|C|3618
8QYX|1|A2|G|3619
8QYX|1|A2|G|3620
8QYX|1|A2|A|3621
8QYX|1|A2|C|3622
8QYX|1|A2|C|3623
8QYX|1|A2|A|3624
8QYX|1|A2|G|3625
8QYX|1|A2|G|3626
*
8QYX|1|A2|C|3835
8QYX|1|A2|A|3836
8QYX|1|A2|C|3837
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain E2
- Large ribosomal subunit protein uL3
- Chain L1
- 60S ribosomal protein L19
- Chain P1
- 60S ribosomal protein L23
- Chain Q1
- 60S ribosomal protein L24
Coloring options: