J5_8QYX_004
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8QYX|1|A2|A|3908, 8QYX|1|A2|A|4394, 8QYX|1|A2|G|4451, 8QYX|1|A2|U|4555, 8QYX|1|A2|U|4556
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QYX|1|A2|A|3903
8QYX|1|A2|G|3904
8QYX|1|A2|A|3905
8QYX|1|A2|A|3906
8QYX|1|A2|G|3907
8QYX|1|A2|A|3908
8QYX|1|A2|C|3909
8QYX|1|A2|C|3910
*
8QYX|1|A2|OMG|4392
8QYX|1|A2|G|4393
8QYX|1|A2|A|4394
8QYX|1|A2|U|4395
8QYX|1|A2|A|4396
8QYX|1|A2|A|4397
8QYX|1|A2|C|4398
8QYX|1|A2|U|4399
8QYX|1|A2|G|4400
*
8QYX|1|A2|C|4444
8QYX|1|A2|U|4445
8QYX|1|A2|U|4446
8QYX|1|A2|5MC|4447
8QYX|1|A2|G|4448
8QYX|1|A2|A|4449
8QYX|1|A2|U|4450
8QYX|1|A2|G|4451
8QYX|1|A2|U|4452
8QYX|1|A2|C|4453
*
8QYX|1|A2|G|4528
8QYX|1|A2|G|4529
8QYX|1|A2|UR3|4530
8QYX|1|A2|U|4531
8QYX|1|A2|PSU|4532
8QYX|1|A2|A|4533
8QYX|1|A2|G|4534
*
8QYX|1|A2|PSU|4552
8QYX|1|A2|A|4553
8QYX|1|A2|G|4554
8QYX|1|A2|U|4555
8QYX|1|A2|U|4556
8QYX|1|A2|U|4557
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain D2
- Large ribosomal subunit protein uL2
- Chain E2
- Large ribosomal subunit protein uL3
- Chain F2
- 60S ribosomal protein L4
- Chain J1
- 60S ribosomal protein L17
- Chain U1
- Large ribosomal subunit protein uL15
- Chain V1
- 60S ribosomal protein L29
- Chain d1
- 60S ribosomal protein L37
Coloring options: