J5_8QYX_005
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8QYX|1|A2|G|3922, 8QYX|1|A2|A|4376, 8QYX|1|A2|G|4377, 8QYX|1|A2|A|4378, 8QYX|1|A2|A|4379
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8QYX_005 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3039
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8QYX|1|A2|PSU|3920
8QYX|1|A2|U|3921
8QYX|1|A2|G|3922
8QYX|1|A2|A|3923
*
8QYX|1|A2|U|4188
8QYX|1|A2|U|4189
8QYX|1|A2|U|4190
8QYX|1|A2|G|4191
*
8QYX|1|A2|C|4204
8QYX|1|A2|A|4205
*
8QYX|1|A2|OMU|4227
8QYX|1|A2|OMG|4228
*
8QYX|1|A2|C|4375
8QYX|1|A2|A|4376
8QYX|1|A2|G|4377
8QYX|1|A2|A|4378
8QYX|1|A2|A|4379
8QYX|1|A2|A|4380
8QYX|1|A2|A|4381
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain D2
- Large ribosomal subunit protein uL2
- Chain H1
- 60S ribosomal protein L15
- Chain K1
- 60S ribosomal protein L18
- Chain N1
- 60S ribosomal protein L21
- Chain U1
- Large ribosomal subunit protein uL15
- Chain V1
- 60S ribosomal protein L29
- Chain i1
- 60S ribosomal protein L36a
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