J5_8R3V_011

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8R3V|1|A2|A|109, 8R3V|1|A2|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8R3V_011 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.1142

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8R3V|1|A2|C|58
8R3V|1|A2|A|59
8R3V|1|A2|A|60
8R3V|1|A2|G|61
*
8R3V|1|A2|C|106
8R3V|1|A2|G|107
8R3V|1|A2|G|108
8R3V|1|A2|A|109
8R3V|1|A2|C|110
8R3V|1|A2|G|111
8R3V|1|A2|G|112
8R3V|1|A2|G|113
*
8R3V|1|A2|C|314
8R3V|1|A2|A|315
8R3V|1|A2|C|316
*
8R3V|1|A2|G|337
8R3V|1|A2|A|338
8R3V|1|A2|C|339
*
8R3V|1|A2|G|350
8R3V|1|A2|G|351
8R3V|1|A2|C|352
8R3V|1|A2|A|353
8R3V|1|A2|G|354

Current chains

Chain A2

16S ribosomal RNA

Nearby chains